› 3bse

X-ray diffraction
1.6Å resolution

Crystal structure analysis of a 16-base-pair B-DNA

Released:
DOI: 10.2210/pdb3bse/pdb
PDB entry 3bse coloured by chain, front view.
PDB entry 3bse coloured by chain, side view.
PDB entry 3bse coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystallographic analysis of a sex-specific enhancer element: sequence-dependent DNA structure, hydration, and dynamics.
Narayana N, Weiss MA
J Mol Biol 385 469-90 (2009)
PMID: 18992257

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116106 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
DNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3') Chain: A
Molecule details ›
Chain: A
Length: 18 nucleotides
Theoretical weight: 5.48 KDa
Source organism: Synthetic construct
Expression system: Not provided
DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3') Chain: B
Molecule details ›
Chain: B
Length: 18 nucleotides
Theoretical weight: 5.55 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand CA 12 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE A1
Spacegroup: R3
Unit cell:
a: 38.74Å b: 38.74Å c: 161.327Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.221 not available 0.274
Expression system: Not provided

Quick links

Citations

1 review citation

The many twists and turns of DNA: template, telomere, tool, and target.
Egli et al. (2010)
19 other articles

23 mentions without citation

DNA Charge Transport: from Chemical Principles to the Cell.
Arnold et al. (2016)
22 more