› 3ce9

X-ray diffraction
2.37Å resolution

Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution

Released:
DOI: 10.2210/pdb3ce9/pdb
PDB entry 3ce9 coloured by chain, front view.
PDB entry 3ce9 coloured by chain, side view.
PDB entry 3ce9 coloured by chain, top view.
Source organism: Clostridium acetobutylicum ATCC 824
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188917 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycerol dehydrogenase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 354 amino acids
Theoretical weight: 39.57 KDa
Source organism: Clostridium acetobutylicum ATCC 824
Expression system: Escherichia coli
UniProt:
  • Canonical: Q97IL4 (Residues: 1-353; Coverage: 100%)
Gene name: CA_C1626
Sequence domains: Iron-containing alcohol dehydrogenase
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand ZN 4 x ZN
Ligand EDO 15 x EDO
Ligand PEG 2 x PEG
1 modified residue:
Ligand MSE 28 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-D
Spacegroup: C2
Unit cell:
a: 102.74Å b: 125.81Å c: 133.23Å
α: 90° β: 102.33° γ: 90°
R-values:
R R work R free
0.189 0.188 0.214
Expression system: Escherichia coli

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