› 3cgx

X-ray diffraction
1.9Å resolution

Crystal structure of putative nucleotide-diphospho-sugar transferase (YP_389115.1) from Desulfovibrio desulfuricans G20 at 1.90 A resolution

Released:
DOI: 10.2210/pdb3cgx/pdb
PDB entry 3cgx coloured by chain, front view.
PDB entry 3cgx coloured by chain, side view.
PDB entry 3cgx coloured by chain, top view.
Source organism: Oleidesulfovibrio alaskensis G20
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-174250 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycosyltransferase Chain: A
Molecule details ›
Chain: A
Length: 242 amino acids
Theoretical weight: 28.12 KDa
Source organism: Oleidesulfovibrio alaskensis G20
Expression system: Escherichia coli
UniProt:
  • Canonical: Q30Y26 (Residues: 3-243; Coverage: 99%)
Gene name: Dde_2624
Sequence domains: Uncharacterized protein conserved in bacteria (DUF2064)
Structure domains: Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A

Ligands and Environments

1 bound ligand:
Ligand IMD 1 x IMD
1 modified residue:
Ligand MSE 9 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P212121
Unit cell:
a: 56.52Å b: 66.94Å c: 71.67Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.173 0.171 0.212
Expression system: Escherichia coli

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