› 3cp3

X-ray diffraction
2Å resolution

Crystal structure of conserved protein of unknown function DIP1874 from Corynebacterium diphtheriae

Released:
DOI: 10.2210/pdb3cp3/pdb
PDB entry 3cp3 coloured by chain, front view.
PDB entry 3cp3 coloured by chain, side view.
PDB entry 3cp3 coloured by chain, top view.
Source organism: Corynebacterium diphtheriae NCTC 13129
Entry authors: Kim Y, Wu R, Clancy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180035 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyridoxamine 5'-phosphate oxidase family protein Chain: A
Molecule details ›
Chain: A
Length: 148 amino acids
Theoretical weight: 16.85 KDa
Source organism: Corynebacterium diphtheriae NCTC 13129
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q6NFL3 (Residues: 1-145; Coverage: 100%)
Gene name: DIP1874
Sequence domains: Pyridoxamine 5'-phosphate oxidase
Structure domains: Electron Transport, Fmn-binding Protein; Chain A

Ligands and Environments

1 bound ligand:
Ligand ACY 1 x ACY
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: I41
Unit cell:
a: 59.374Å b: 59.374Å c: 98.948Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.188 0.229
Expression system: Escherichia coli BL21(DE3)

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