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X-ray diffraction
2.15Å resolution

Crystal structure of a putative aminoglycoside phosphotransferase (YP_614837.1) from Silicibacter sp. TM1040 at 2.15 A resolution

Released:
DOI: 10.2210/pdb3csv/pdb
PDB entry 3csv coloured by chain, front view.
PDB entry 3csv coloured by chain, side view.
PDB entry 3csv coloured by chain, top view.
Source organism: Ruegeria sp. TM1040
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172834 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Aminoglycoside phosphotransferase domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 333 amino acids
Theoretical weight: 38.2 KDa
Source organism: Ruegeria sp. TM1040
Expression system: Escherichia coli
UniProt:
  • Canonical: Q1GCP1 (Residues: 1-332; Coverage: 100%)
Gene name: TM1040_2843
Sequence domains: Phosphotransferase enzyme family
Structure domains:

Ligands and Environments

5 bound ligands:
Ligand ZN 1 x ZN
Ligand NA 1 x NA
Ligand CL 1 x CL
Ligand SO4 1 x SO4
Ligand EDO 11 x EDO
1 modified residue:
Ligand MSE 7 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: C2
Unit cell:
a: 113.68Å b: 55.94Å c: 61.22Å
α: 90° β: 102.9° γ: 90°
R-values:
R R work R free
0.171 0.168 0.228
Expression system: Escherichia coli

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