› 3cz8

X-ray diffraction
2.2Å resolution

Crystal structure of putative sporulation-specific glycosylase ydhD from Bacillus subtilis

Released:
DOI: 10.2210/pdb3cz8/pdb
PDB entry 3cz8 coloured by chain, front view.
PDB entry 3cz8 coloured by chain, side view.
PDB entry 3cz8 coloured by chain, top view.
Source organism: Bacillus subtilis subsp. subtilis str. 168
Entry authors: Patskovsky Y, Romero R, Rutter M, Chang S, Maletic M, Smith D, Wasserman SR, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126482 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative sporulation-specific glycosylase YdhD Chains: A, B
Molecule details ›
Chains: A, B
Length: 319 amino acids
Theoretical weight: 36.06 KDa
Source organism: Bacillus subtilis subsp. subtilis str. 168
Expression system: Escherichia coli
UniProt:
  • Canonical: O05495 (Residues: 96-403; Coverage: 73%)
Gene names: BSU05710, ydhD
Sequence domains: Glycosyl hydrolases family 18
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand GOL 8 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P65
Unit cell:
a: 84.965Å b: 84.965Å c: 188.041Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.198 0.196 0.258
Expression system: Escherichia coli

Quick links