› 3d0k

X-ray diffraction
1.83Å resolution

Crystal structure of the LpqC, poly(3-hydroxybutyrate) depolymerase from Bordetella parapertussis

Released:
DOI: 10.2210/pdb3d0k/pdb
PDB entry 3d0k coloured by chain, front view.
PDB entry 3d0k coloured by chain, side view.
PDB entry 3d0k coloured by chain, top view.
Source organism: Bordetella parapertussis 12822
Entry authors: Kim Y, Tesar C, Jedrzejczak R, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182101 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Alpha/beta hydrolase Chains: A, B
Molecule details ›
Chains: A, B
Length: 304 amino acids
Theoretical weight: 33.66 KDa
Source organism: Bordetella parapertussis 12822
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q7W3B7 (Residues: 1-301; Coverage: 100%)
Gene name: BPP4128
Structure domains: alpha/beta hydrolase

Ligands and Environments

3 bound ligands:
Ligand CL 3 x CL
Ligand SO4 12 x SO4
Ligand FMT 3 x FMT
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P21
Unit cell:
a: 41.879Å b: 83.71Å c: 90.792Å
α: 90° β: 92.68° γ: 90°
R-values:
R R work R free
0.166 0.164 0.209
Expression system: Escherichia coli BL21(DE3)

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