› 3d3y

X-ray diffraction
1.95Å resolution

Crystal structure of a conserved protein from Enterococcus faecalis V583

Released:
DOI: 10.2210/pdb3d3y/pdb
PDB entry 3d3y coloured by chain, front view.
PDB entry 3d3y coloured by chain, side view.
PDB entry 3d3y coloured by chain, top view.
Source organism: Enterococcus faecalis V583
Entry authors: Tan K, Li H, Clancy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182729 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidase M16 C-terminal domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 425 amino acids
Theoretical weight: 49.06 KDa
Source organism: Enterococcus faecalis V583
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q82ZB5 (Residues: 1-422; Coverage: 100%)
Gene name: EF_3151
Sequence domains: Peptidase M16 inactive domain
Structure domains: Metalloenzyme, LuxS/M16 peptidase-like

Ligands and Environments

2 bound ligands:
Ligand ACT 4 x ACT
Ligand EDO 4 x EDO
1 modified residue:
Ligand MSE 9 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: I4
Unit cell:
a: 122.437Å b: 122.437Å c: 69.003Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.174 0.172 0.213
Expression system: Escherichia coli BL21

Quick links