› 3d6j

X-ray diffraction
2Å resolution

Crystal structure of Putative haloacid dehalogenase-like hydrolase from Bacteroides fragilis

Released:
DOI: 10.2210/pdb3d6j/pdb
PDB entry 3d6j coloured by chain, front view.
PDB entry 3d6j coloured by chain, side view.
PDB entry 3d6j coloured by chain, top view.
Source organism: Bacteroides fragilis NCTC 9343
Entry authors: Chang C, Wu R, Cobb G, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177499 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Haloacid dehalogenase-like hydrolase Chain: A
Molecule details ›
Chain: A
Length: 225 amino acids
Theoretical weight: 25.32 KDa
Source organism: Bacteroides fragilis NCTC 9343
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5LGR4 (Residues: 1-222; Coverage: 100%)
Gene name: BF9343_0892
Sequence domains: Haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand PO4 2 x PO4
Ligand GOL 1 x GOL
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P41212
Unit cell:
a: 62.62Å b: 62.62Å c: 133.913Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.2 0.198 0.235
Expression system: Escherichia coli

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