› 3dc7

X-ray diffraction
2.12Å resolution

Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109.

Released:
DOI: 10.2210/pdb3dc7/pdb
PDB entry 3dc7 coloured by chain, front view.
PDB entry 3dc7 coloured by chain, side view.
PDB entry 3dc7 coloured by chain, top view.
Source organism: Lactiplantibacillus plantarum
Entry authors: Kuzin AP, Abashidze M, Vorobiev SM, Seetharaman J, Zhao L, Mao L, Ciccosanti C, Xiao R, Nair R, Baran MC, Acton TB, Rost B, Montelione GT, Hunt JF, Tong L, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-163478 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative uncharacterized protein lp_3323 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 232 amino acids
Theoretical weight: 25.71 KDa
Source organism: Lactiplantibacillus plantarum
Structure domains: SGNH hydrolase

Ligands and Environments

3 bound ligands:
Ligand SO4 3 x SO4
Ligand NA 2 x NA
Ligand MG 1 x MG
1 modified residue:
Ligand MSE 27 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P212121
Unit cell:
a: 48.61Å b: 101.44Å c: 125.55Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.186 0.184 0.224

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