› 3ded

X-ray diffraction
2.14Å resolution

C-terminal domain of Probable hemolysin from Chromobacterium violaceum

Released:
DOI: 10.2210/pdb3ded/pdb
PDB entry 3ded coloured by chain, front view.
PDB entry 3ded coloured by chain, side view.
PDB entry 3ded coloured by chain, top view.
Source organism: Chromobacterium violaceum
Entry authors: Chang C, Xu X, Cui H, Savchenko A, Edwards A, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181866 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Probable hemolysin Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 113 amino acids
Theoretical weight: 13.23 KDa
Source organism: Chromobacterium violaceum
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7P1I2 (Residues: 337-427; Coverage: 21%)
Gene name: CV_0231
Sequence domains: Transporter associated domain
Structure domains: Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3

Ligands and Environments

1 bound ligand:
Ligand CA 9 x CA
1 modified residue:
Ligand MSE 24 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P21
Unit cell:
a: 66.144Å b: 55.312Å c: 93.734Å
α: 90° β: 94.34° γ: 90°
R-values:
R R work R free
0.188 0.186 0.235
Expression system: Escherichia coli

Quick links