› 3dfh

X-ray diffraction
2.2Å resolution

crystal structure of putative mandelate racemase / muconate lactonizing enzyme from Vibrionales bacterium SWAT-3

Released:
DOI: 10.2210/pdb3dfh/pdb
PDB entry 3dfh coloured by chain, front view.
PDB entry 3dfh coloured by chain, side view.
PDB entry 3dfh coloured by chain, top view.
Source organism: Vibrionales bacterium SWAT-3
Entry authors: Malashkevich VN, Toro R, Wasserman SR, Meyer AJ, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo octamer
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107703 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
D-galactonate dehydratase family member VSWAT3_13707 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 394 amino acids
Theoretical weight: 44.73 KDa
Source organism: Vibrionales bacterium SWAT-3
Expression system: Escherichia coli
UniProt:
  • Canonical: A5KUH4 (Residues: 2-385; Coverage: 96%)
Gene name: VSWAT3_13707
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand NA 3 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04
Spacegroup: I422
Unit cell:
a: 121.836Å b: 121.836Å c: 319.347Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.176 0.173 0.234
Expression system: Escherichia coli

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