› 3djm

X-ray diffraction
2.51Å resolution

CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM DUF427 FAMILY (RSPH17029_0682) FROM RHODOBACTER SPHAEROIDES 2.4.1 AT 2.51 A RESOLUTION

Released:
DOI: 10.2210/pdb3djm/pdb
PDB entry 3djm coloured by chain, front view.
PDB entry 3djm coloured by chain, side view.
PDB entry 3djm coloured by chain, top view.
Source organism: Cereibacter sphaeroides 2.4.1
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-174615 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF427 domain-containing protein Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 116 amino acids
Theoretical weight: 12.93 KDa
Source organism: Cereibacter sphaeroides 2.4.1
Expression system: Escherichia coli
UniProt:
  • Canonical: Q3J512 (Residues: 1-115; Coverage: 100%)
Gene name: RSP_1974
Sequence domains: Domain of unknown function (DUF427)
Structure domains: Domain of unknown function (DUF427)

Ligands and Environments

1 bound ligand:
Ligand EDO 5 x EDO
1 modified residue:
Ligand MSE 20 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P212121
Unit cell:
a: 66.403Å b: 93.087Å c: 128.016Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.213 0.212 0.228
Expression system: Escherichia coli

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