› 3dka

X-ray diffraction
2.3Å resolution

Crystal structure of a dinb-like protein (yjoa, bsu12410) from bacillus subtilis at 2.30 A resolution

Released:
DOI: 10.2210/pdb3dka/pdb
PDB entry 3dka coloured by chain, front view.
PDB entry 3dka coloured by chain, side view.
PDB entry 3dka coloured by chain, top view.
Source organism: Bacillus subtilis
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128529 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DinB-like Protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 155 amino acids
Theoretical weight: 18.11 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli
UniProt:
  • Canonical: O34334 (Residues: 1-154; Coverage: 100%)
Gene names: BSU12410, yjoA
Sequence domains: DinB family
Structure domains: dinb family like domain

Ligands and Environments

1 bound ligand:
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 57.69Å b: 63.34Å c: 82.06Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.219 0.217 0.269
Expression system: Escherichia coli

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