› 3dlc

X-ray diffraction
1.15Å resolution

Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution

Released:
DOI: 10.2210/pdb3dlc/pdb
PDB entry 3dlc coloured by chain, front view.
PDB entry 3dlc coloured by chain, side view.
PDB entry 3dlc coloured by chain, top view.
Source organism: Methanococcus maripaludis
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-179867 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Methyltransferase type 11 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 219 amino acids
Theoretical weight: 24.76 KDa
Source organism: Methanococcus maripaludis
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6LY14 (Residues: 1-218; Coverage: 100%)
Gene name: MMP1179
Sequence domains: Methyltransferase domain
Structure domains: Vaccinia Virus protein VP39

Ligands and Environments

3 bound ligands:
Ligand ACT 1 x ACT
Ligand SAM 1 x SAM
Ligand GOL 2 x GOL
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 39.61Å b: 63.5Å c: 75.44Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.121 0.12 0.138
Expression system: Escherichia coli

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