› 3dnh

X-ray diffraction
1.94Å resolution

The crystal structure of the protein Atu2129 (unknown function) from Agrobacterium tumefaciens str. C58

Released:
DOI: 10.2210/pdb3dnh/pdb
PDB entry 3dnh coloured by chain, front view.
PDB entry 3dnh coloured by chain, side view.
PDB entry 3dnh coloured by chain, top view.
Source organism: Agrobacterium fabrum str. C58
Entry authors: Tan K, Xu X, Zheng H, Savchenko A, Edwards A, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108894 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyridoxamine 5-phosphate oxidase Chains: A, B
Molecule details ›
Chains: A, B
Length: 258 amino acids
Theoretical weight: 27.73 KDa
Source organism: Agrobacterium fabrum str. C58
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: A9CI98 (Residues: 1-254; Coverage: 100%)
Gene name: Atu2129
Sequence domains: Pyridoxamine 5'-phosphate oxidase
Structure domains:

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P21
Unit cell:
a: 53.651Å b: 66.83Å c: 69.967Å
α: 90° β: 108.19° γ: 90°
R-values:
R R work R free
0.189 0.187 0.238
Expression system: Escherichia coli BL21

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