› 3dup

X-ray diffraction
1.8Å resolution

Crystal structure of mutt/nudix family hydrolase from rhodospirillum rubrum atcc 11170

Released:
DOI: 10.2210/pdb3dup/pdb
Model geometry
Fit model/data
PDB entry 3dup coloured by chain, front view.
PDB entry 3dup coloured by chain, side view.
PDB entry 3dup coloured by chain, top view.
Source organism: Rhodospirillum rubrum ATCC 11170
Entry authors: Patskovsky Y, Ramagopal UA, Toro R, Freeman J, Chang S, Groshong C, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-173927 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nudix hydrolase domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 300 amino acids
Theoretical weight: 33.6 KDa
Source organism: Rhodospirillum rubrum ATCC 11170
Expression system: Escherichia coli
UniProt:
  • Canonical: Q2RXX6 (Residues: 2-290; Coverage: 99%)
Gene name: Rru_A0214
Sequence domains: Domain of unknown function (DUF4743)
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand PO4 2 x PO4
Ligand GOL 7 x GOL
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P61
Unit cell:
a: 115.32Å b: 115.32Å c: 115.935Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.171 0.169 0.208
Expression system: Escherichia coli

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