› 3dza

X-ray diffraction
1.65Å resolution

Crystal structure of a putative membrane protein of unknown function (yfdx) from klebsiella pneumoniae subsp. at 1.65 A resolution

Released:
DOI: 10.2210/pdb3dza/pdb
PDB entry 3dza coloured by chain, front view.
PDB entry 3dza coloured by chain, side view.
PDB entry 3dza coloured by chain, top view.
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108079 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YfdX family protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 191 amino acids
Theoretical weight: 20.3 KDa
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Expression system: Escherichia coli
UniProt:
  • Canonical: A6TE93 (Residues: 31-220; Coverage: 100%)
Gene names: KPN_03482, yfdX
Sequence domains: YfdX protein
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand ZN 10 x ZN
Ligand EDO 24 x EDO
Ligand ACT 5 x ACT
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 68.207Å b: 79.016Å c: 137.99Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.154 0.152 0.194
Expression system: Escherichia coli

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