› 3e2v

X-ray diffraction
1.5Å resolution

Crystal structure of an uncharacterized amidohydrolase from Saccharomyces cerevisiae

Released:
DOI: 10.2210/pdb3e2v/pdb
Model geometry
Fit model/data
PDB entry 3e2v coloured by chain, front view.
PDB entry 3e2v coloured by chain, side view.
PDB entry 3e2v coloured by chain, top view.
Source organism: Saccharomyces cerevisiae YJM789
Entry authors: Bonanno JB, Dickey M, Bain KT, Hu S, Romero R, Smith D, Wasserman S, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108167 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
3'-5'-exonuclease Chains: A, B
Molecule details ›
Chains: A, B
Length: 401 amino acids
Theoretical weight: 45.43 KDa
Source organism: Saccharomyces cerevisiae YJM789
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A6ZKP4 (Residues: 28-418; Coverage: 94%)
Gene name: SCY_0164
Sequence domains: TatD related DNase
Structure domains: Metal-dependent hydrolases

Ligands and Environments

2 bound ligands:
Ligand GOL 4 x GOL
Ligand MG 3 x MG
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P21
Unit cell:
a: 62.532Å b: 55.007Å c: 115.26Å
α: 90° β: 95.85° γ: 90°
R-values:
R R work R free
0.174 0.173 0.199
Expression system: Escherichia coli BL21(DE3)

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