› 3e8v

X-ray diffraction
2.4Å resolution

Crystal structure of a possible transglutaminase-family protein proteolytic fragment from Bacteroides fragilis

Released:
DOI: 10.2210/pdb3e8v/pdb
PDB entry 3e8v coloured by chain, front view.
PDB entry 3e8v coloured by chain, side view.
PDB entry 3e8v coloured by chain, top view.
Source organism: Bacteroides fragilis NCTC 9343
Entry authors: Bonanno JB, Rutter M, Bain KT, Hu S, Romero R, Smith D, Wasserman S, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177494 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Transglutaminase-like domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 82 amino acids
Theoretical weight: 8.92 KDa
Source organism: Bacteroides fragilis NCTC 9343
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5LGG0 (Residues: 289-370; Coverage: 9%)
Gene name: BF9343_0999
Structure domains: Carboxypeptidase-like, regulatory domain

Ligands and Environments

1 bound ligand:
Ligand UNL 1 x UNL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P3121
Unit cell:
a: 82.006Å b: 82.006Å c: 32.367Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.226 0.225 0.243
Expression system: Escherichia coli

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