› 3eby

X-ray diffraction
1.75Å resolution

Crystal structure of the beta subunit of a putative aromatic-ring-hydroxylating dioxygenase (YP_001165631.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.75 A resolution

Released:
DOI: 10.2210/pdb3eby/pdb
PDB entry 3eby coloured by chain, front view.
PDB entry 3eby coloured by chain, side view.
PDB entry 3eby coloured by chain, top view.
Source organism: Novosphingobium aromaticivorans DSM 12444
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107477 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Aromatic-ring-hydroxylating dioxygenase, beta subunit Chain: A
Molecule details ›
Chain: A
Length: 163 amino acids
Theoretical weight: 18.11 KDa
Source organism: Novosphingobium aromaticivorans DSM 12444
Expression system: Escherichia coli
UniProt:
  • Canonical: A4XDU4 (Residues: 1-162; Coverage: 100%)
Gene name: Saro_3860
Sequence domains: Ring hydroxylating beta subunit
Structure domains: Nuclear Transport Factor 2; Chain: A,

Ligands and Environments

1 bound ligand:
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: R32
Unit cell:
a: 80.29Å b: 80.29Å c: 145.02Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.17 0.168 0.205
Expression system: Escherichia coli

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