› 3enw

X-ray diffraction
2Å resolution

Substrate and inhibitor complexes of ribose 5-phosphate isomerase from Vibrio vulnificus YJ016

Released:
DOI: 10.2210/pdb3enw/pdb
PDB entry 3enw coloured by chain, front view.
PDB entry 3enw coloured by chain, side view.
PDB entry 3enw coloured by chain, top view.
Source organism: Vibrio vulnificus
Primary publication:
Crystal structures of substrate and inhibitor complexes of ribose 5-phosphate isomerase A from Vibrio vulnificus YJ016.
Kim TG, Kwon TH, Min K, Dong MS, Park YI, Ban C
Mol Cells 27 99-103 (2009)
PMID: 19214439

Function and Biology Details

Reaction catalysed: 
D-ribose 5-phosphate = D-ribulose 5-phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181724 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ribose-5-phosphate isomerase A Chains: A, B
Molecule details ›
Chains: A, B
Length: 235 amino acids
Theoretical weight: 24.67 KDa
Source organism: Vibrio vulnificus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7MHL9 (Residues: 1-218; Coverage: 100%)
Gene names: VV2850, rpiA
Sequence domains: Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand 5RP 2 x 5RP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 4A
Spacegroup: R3
Unit cell:
a: 77.062Å b: 77.062Å c: 189.258Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.196 0.192 0.272
Expression system: Escherichia coli

Quick links

Citations

1 citations in other articles

The Photodynamic Properties and the Genotoxicity of Heat-Treated Silicalite-1 Films.
Jirka et al. (2019)

1 mention without citation

Structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC118.
Lobley et al. (2012)