› 3eu8

X-ray diffraction
2.12Å resolution

Crystal structure of putative glucoamylase (YP_210071.1) from Bacteroides fragilis NCTC 9343 at 2.12 A resolution

Released:
DOI: 10.2210/pdb3eu8/pdb
PDB entry 3eu8 coloured by chain, front view.
PDB entry 3eu8 coloured by chain, side view.
PDB entry 3eu8 coloured by chain, top view.
Source organism: Bacteroides fragilis NCTC 9343
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177509 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Conserved hypothetical exported protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 430 amino acids
Theoretical weight: 49.18 KDa
Source organism: Bacteroides fragilis NCTC 9343
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5LIB7 (Residues: 23-451; Coverage: 95%)
Gene name: BF9343_0330
Sequence domains:
Structure domains: Glycosyltransferase

Ligands and Environments

3 bound ligands:
Ligand K 5 x K
Ligand EDO 84 x EDO
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 48 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P21
Unit cell:
a: 58.18Å b: 71.76Å c: 221.79Å
α: 90° β: 92.3° γ: 90°
R-values:
R R work R free
0.161 0.158 0.213
Expression system: Escherichia coli

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