› 3f13

X-ray diffraction
1.7Å resolution

Crystal structure of putative nudix hydrolase family member from Chromobacterium violaceum

Released:
DOI: 10.2210/pdb3f13/pdb
PDB entry 3f13 coloured by chain, front view.
PDB entry 3f13 coloured by chain, side view.
PDB entry 3f13 coloured by chain, top view.
Source organism: Chromobacterium violaceum
Entry authors: Bonanno JB, Freeman J, Bain KT, Do J, Romero R, Wasserman S, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181842 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nudix hydrolase domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 163 amino acids
Theoretical weight: 18.52 KDa
Source organism: Chromobacterium violaceum
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q7NWQ3 (Residues: 4-156; Coverage: 98%)
Gene name: CV_1928
Sequence domains: NUDIX domain
Structure domains: Nucleoside Triphosphate Pyrophosphohydrolase

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P1
Unit cell:
a: 40.95Å b: 43.877Å c: 55.967Å
α: 73.47° β: 74.06° γ: 62.66°
R-values:
R R work R free
0.223 0.221 0.264
Expression system: Escherichia coli BL21(DE3)

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