› 3f3b

X-ray diffraction
2.5Å resolution

Structure of the phage-like element PBSX protein xkdH from Bacillus Subtilus. Northeast Structural Genomics Consortium target SR352.

Released:
DOI: 10.2210/pdb3f3b/pdb
PDB entry 3f3b coloured by chain, front view.
PDB entry 3f3b coloured by chain, side view.
PDB entry 3f3b coloured by chain, top view.
Source organism: Bacillus subtilis
Entry authors: Kuzin AP, Neely H, Seetharaman J, Clayton G, Ho CK, Janjua H, Cunningham K, Ma L-C, Xiao R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT, Tong L, Hunt JF, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-157011 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phage-like element PBSX protein XkdH Chain: A
Molecule details ›
Chain: A
Length: 126 amino acids
Theoretical weight: 15.16 KDa
Source organism: Bacillus subtilis
Expression system: Not provided
UniProt:
  • Canonical: P54328 (Residues: 1-118; Coverage: 100%)
Gene names: BSU12620, xkdH
Sequence domains: Domain of unknown function (DUF3599)
Structure domains: Protein of unknown function DUF3599

Ligands and Environments

1 bound ligand:
Ligand PO4 2 x PO4
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: P6522
Unit cell:
a: 42.661Å b: 42.661Å c: 283.65Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.23 0.23 0.263
Expression system: Not provided

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