› 3f5d

X-ray diffraction
2.06Å resolution

Crystal Structure of a protein of unknown function from Bacillus subtilis

Released:
DOI: 10.2210/pdb3f5d/pdb
PDB entry 3f5d coloured by chain, front view.
PDB entry 3f5d coloured by chain, side view.
PDB entry 3f5d coloured by chain, top view.
Source organism: Bacillus subtilis
Entry authors: Sugadev R, Burley SK, Swaminathan S, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
homo dimer
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-161237 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Uncharacterized protease YdeA Chain: A
Molecule details ›
Chain: A
Length: 206 amino acids
Theoretical weight: 23.86 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli
UniProt:
  • Canonical: P96658 (Residues: 2-196; Coverage: 99%)
Gene names: BSU05110, ydeA
Sequence domains: DJ-1/PfpI family
Structure domains: Rossmann fold

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C
Spacegroup: C2
Unit cell:
a: 75.597Å b: 72.5Å c: 47.56Å
α: 90° β: 124.41° γ: 90°
R-values:
R R work R free
0.239 0.213 0.257
Expression system: Escherichia coli

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