› 3f7f

X-ray diffraction
2.6Å resolution

Structure of Nup120

Released:
DOI: 10.2210/pdb3f7f/pdb
PDB entry 3f7f coloured by chain, front view.
PDB entry 3f7f coloured by chain, side view.
PDB entry 3f7f coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Structural and functional analysis of Nup120 suggests ring formation of the Nup84 complex.
Seo HS, Ma Y, Debler EW, Wacker D, Kutik S, Blobel G, Hoelz A
Proc Natl Acad Sci U S A 106 14281-6 (2009)
PMID: 19706512

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-153005 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoporin NUP120 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 729 amino acids
Theoretical weight: 83.88 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P35729 (Residues: 1-729; Coverage: 70%)
Gene names: NUP120, RAT2, YKL057C, YKL313, YKL314

Ligands and Environments

1 bound ligand:
Ligand HG 12 x HG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A, APS BEAMLINE 23-ID-D
Spacegroup: P1
Unit cell:
a: 52.68Å b: 117.478Å c: 146.287Å
α: 89.94° β: 89.77° γ: 89.89°
R-values:
R R work R free
0.232 0.232 0.254
Expression system: Escherichia coli

Quick links

Citations

19 review citations

The nuclear pore complex and nuclear transport.
Wente et al. (2010)
18 more

5 mentions without citation

The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coat-like proteins.
Santarella-Mellwig et al. (2010)
4 more