› 3f8o

X-ray diffraction
1.72Å resolution

Structure of d(CACGCG).d(CGCGTG) with low concentration of PdCl2

Released:
DOI: 10.2210/pdb3f8o/pdb
Model geometry
Fit model/data
PDB entry 3f8o coloured by chain, front view.
PDB entry 3f8o coloured by chain, side view.
PDB entry 3f8o coloured by chain, top view.
Source organism: Synthetic construct
Entry authors: Mandal PK, Venkadesh S, Gautham N

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116241 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
DNA (5'-D(*DCP*DAP*DCP*DGP*DCP*DG)-3') Chain: A
Molecule details ›
Chain: A
Length: 6 nucleotides
Theoretical weight: 1.79 KDa
Source organism: Synthetic construct
Expression system: Not provided
DNA (5'-D(*DCP*DGP*DCP*DGP*DTP*DG)-3') Chain: B
Molecule details ›
Chain: B
Length: 6 nucleotides
Theoretical weight: 1.83 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: BRUKER AXS MICROSTAR
Spacegroup: P212121
Unit cell:
a: 17.785Å b: 30.941Å c: 44.789Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.219 0.218 0.24
Expression system: Not provided

Quick links