› 3fd3

X-ray diffraction
1.7Å resolution

Structure of the C-terminal domains of a LysR family protein from Agrobacterium tumefaciens str. C58.

Released:
DOI: 10.2210/pdb3fd3/pdb
PDB entry 3fd3 coloured by chain, front view.
PDB entry 3fd3 coloured by chain, side view.
PDB entry 3fd3 coloured by chain, top view.
Source organism: Agrobacterium fabrum str. C58
Entry authors: Cuff ME, Xu X, Zeng H, Edwards A, Savchenko A, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108927 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
HTH lysR-type domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 208 amino acids
Theoretical weight: 22.61 KDa
Source organism: Agrobacterium fabrum str. C58
Expression system: Escherichia coli
UniProt:
  • Canonical: A9CJQ0 (Residues: 94-301; Coverage: 69%)
Gene name: Atu0928
Sequence domains: LysR substrate binding domain
Structure domains: Periplasmic binding protein-like II

Ligands and Environments

4 bound ligands:
Ligand CA 1 x CA
Ligand P33 1 x P33
Ligand PG4 1 x PG4
Ligand EDO 1 x EDO
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P43212
Unit cell:
a: 53.613Å b: 53.613Å c: 188.027Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.171 0.169 0.2
Expression system: Escherichia coli

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