› 3fdi

X-ray diffraction
2.2Å resolution

Crystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560.

Released:
DOI: 10.2210/pdb3fdi/pdb
PDB entry 3fdi coloured by chain, front view.
PDB entry 3fdi coloured by chain, side view.
PDB entry 3fdi coloured by chain, top view.
Source organism: Eubacterium ventriosum ATCC 27560
Entry authors: Nocek B, Keigher L, Jedrzejczak R, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assemblies composition:
homo tetramer
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107805 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytidylate kinase-like family protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 201 amino acids
Theoretical weight: 23.48 KDa
Source organism: Eubacterium ventriosum ATCC 27560
Expression system: Escherichia coli
UniProt:
  • Canonical: A5Z9C0 (Residues: 1-198; Coverage: 100%)
Gene name: EUBVEN_02315
Sequence domains: Cytidylate kinase-like family
Structure domains: P-loop containing nucleotide triphosphate hydrolases

Ligands and Environments

2 bound ligands:
Ligand SO4 4 x SO4
Ligand CL 2 x CL
1 modified residue:
Ligand MSE 18 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: C2
Unit cell:
a: 84.613Å b: 114.932Å c: 59.53Å
α: 90° β: 128.06° γ: 90°
R-values:
R R work R free
0.202 0.198 0.244
Expression system: Escherichia coli

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