› 3fdj

X-ray diffraction
1.8Å resolution

The structure of a DegV family protein from Eubacterium eligens.

Released:
DOI: 10.2210/pdb3fdj/pdb
PDB entry 3fdj coloured by chain, front view.
PDB entry 3fdj coloured by chain, side view.
PDB entry 3fdj coloured by chain, top view.
Source organism: Lachnospira eligens
Entry authors: Cuff ME, Hendricks R, Freeman L, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112189 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DegV family protein Chain: A
Molecule details ›
Chain: A
Length: 278 amino acids
Theoretical weight: 30.74 KDa
Source organism: Lachnospira eligens
Expression system: Escherichia coli
UniProt:
  • Canonical: D0VX07 (Residues: 1-278; Coverage: 100%)
Sequence domains: Uncharacterised protein, DegV family COG1307
Structure domains:

Ligands and Environments

5 bound ligands:
Ligand P6G 1 x P6G
Ligand EDO 1 x EDO
Ligand PG4 1 x PG4
Ligand NA 1 x NA
Ligand ACY 1 x ACY
1 modified residue:
Ligand MSE 9 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P41212
Unit cell:
a: 57.445Å b: 57.445Å c: 186.558Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.162 0.16 0.191
Expression system: Escherichia coli

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