› 3fqj

X-ray diffraction
2.62Å resolution

Crystal Structure of the Mouse Dom3Z in Complex with GDP

Released:
DOI: 10.2210/pdb3fqj/pdb
PDB entry 3fqj coloured by chain, front view.
PDB entry 3fqj coloured by chain, side view.
PDB entry 3fqj coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
Structure and function of the 5'-->3' exoribonuclease Rat1 and its activating partner Rai1.
Xiang S, Cooper-Morgan A, Jiao X, Kiledjian M, Manley JL, Tong L
Nature 458 784-8 (2009)
PMID: 19194460

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-130692 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Decapping and exoribonuclease protein Chain: A
Molecule details ›
Chain: A
Length: 417 amino acids
Theoretical weight: 47.51 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: O70348 (Residues: 1-397; Coverage: 100%)
Gene names: Dom3z, Dxo, Ng6
Sequence domains: RAI1 like PD-(D/E)XK nuclease

Ligands and Environments

2 bound ligands:
Ligand MG 1 x MG
Ligand GDP 1 x GDP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4C
Spacegroup: P212121
Unit cell:
a: 58.293Å b: 73.573Å c: 108.89Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.207 0.204 0.267
Expression system: Escherichia coli

Quick links

Citations

42 review citations

RNA degradation in Saccharomyces cerevisae.
Parker R. (2012)
41 more

2 mentions without citation

Structure and function of pre-mRNA 5'-end capping quality control and 3'-end processing.
Jurado et al. (2014)
1 more