› 3fzq

X-ray diffraction
2.1Å resolution

Crystal structure of putative haloacid dehalogenase-like hydrolase (YP_001086940.1) from Clostridium difficile 630 at 2.10 A resolution

Released:
DOI: 10.2210/pdb3fzq/pdb
PDB entry 3fzq coloured by chain, front view.
PDB entry 3fzq coloured by chain, side view.
PDB entry 3fzq coloured by chain, top view.
Source organism: Clostridioides difficile 630
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172716 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hydrolase, HAD superfamily, subfamily IIB Chains: A, B
Molecule details ›
Chains: A, B
Length: 274 amino acids
Theoretical weight: 31.97 KDa
Source organism: Clostridioides difficile 630
Expression system: Escherichia coli
UniProt:
  • Canonical: Q188R2 (Residues: 1-271; Coverage: 100%)
Gene name: CD630_04670
Sequence domains: haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand PO4 2 x PO4
Ligand EDO 8 x EDO
Ligand NA 1 x NA
1 modified residue:
Ligand MSE 14 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P21
Unit cell:
a: 49.232Å b: 55.737Å c: 116.778Å
α: 90° β: 96.97° γ: 90°
R-values:
R R work R free
0.19 0.188 0.23
Expression system: Escherichia coli

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