› 3g12

X-ray diffraction
2.58Å resolution

Crystal structure of a putative lactoylglutathione lyase from Bdellovibrio bacteriovorus

Released:
DOI: 10.2210/pdb3g12/pdb
PDB entry 3g12 coloured by chain, front view.
PDB entry 3g12 coloured by chain, side view.
PDB entry 3g12 coloured by chain, top view.
Source organism: Bdellovibrio bacteriovorus HD100
Entry authors: Patskovsky Y, Madegowda M, Gilmore M, Chang S, Maletic M, Smith D, Sauder JM, Burley SK, Swaminathan S, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-179890 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
VOC domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 128 amino acids
Theoretical weight: 14.26 KDa
Source organism: Bdellovibrio bacteriovorus HD100
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6MK89 (Residues: 2-118; Coverage: 99%)
Gene name: Bd2520
Sequence domains: Lactoylglutathione lyase, putative-like, N-terminal
Structure domains: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1

Ligands and Environments

1 bound ligand:
Ligand SO4 1 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P43212
Unit cell:
a: 91.276Å b: 91.276Å c: 57.711Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.214 0.212 0.275
Expression system: Escherichia coli

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