› 3gan

X-ray diffraction
2Å resolution

Crystal structure of gene product from Arabidopsis thaliana At3g22680 with bound suramin

Released:
DOI: 10.2210/pdb3gan/pdb
PDB entry 3gan coloured by chain, front view.
PDB entry 3gan coloured by chain, side view.
PDB entry 3gan coloured by chain, top view.
Source organism: Arabidopsis thaliana
Entry authors: Burgie ES, Bingman CA, Wesenberg GE, Phillips Jr GN, Center for Eukaryotic Structural Genomics (CESG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-192318 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein RDM1 Chain: A
Molecule details ›
Chain: A
Length: 157 amino acids
Theoretical weight: 18.24 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9LUJ3 (Residues: 8-163; Coverage: 96%)
Gene names: At3g22680, MWI23.5, RDM1
Sequence domains: RNA-directed DNA methylation 1
Structure domains: RDM1 protein domain

Ligands and Environments

2 bound ligands:
Ligand SVR 2 x SVR
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-D
Spacegroup: P3221
Unit cell:
a: 58.381Å b: 58.381Å c: 90.287Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.192 0.19 0.241
Expression system: Escherichia coli

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