› 3ghj

X-ray diffraction
1.47Å resolution

Crystal structure from the mobile metagenome of Halifax Harbour Sewage Outfall: Integron Cassette Protein HFX_CASS4

Released:
DOI: 10.2210/pdb3ghj/pdb
PDB entry 3ghj coloured by chain, front view.
PDB entry 3ghj coloured by chain, side view.
PDB entry 3ghj coloured by chain, top view.
Source organism: uncultured bacterium
Entry authors: Sureshan V, Deshpande C, Harrop SJ, Kudritska M, Koenig JE, Evdokimova E, Kim Y, Edwards AM, Savchenko A, Joachimiak A, Doolittle WF, Stokes HW, Curmi PMG, Mabbutt BC, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109114 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
VOC domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 141 amino acids
Theoretical weight: 16.33 KDa
Source organism: uncultured bacterium
Expression system: Escherichia coli
UniProt:
  • Canonical: B0BGV9 (Residues: 2-120; Coverage: 99%)
Gene name: ORF1
Sequence domains: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Structure domains: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: C2221
Unit cell:
a: 51.001Å b: 66.391Å c: 80.822Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.169 0.168 0.183
Expression system: Escherichia coli

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