› 3gjj

X-ray diffraction
2.9Å resolution

crystal structure of a DNA duplex containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one

Released:
DOI: 10.2210/pdb3gjj/pdb
PDB entry 3gjj coloured by chain, front view.
PDB entry 3gjj coloured by chain, side view.
PDB entry 3gjj coloured by chain, top view.
Source organism: Synthetic construct
Entry authors: Takenaka A, Juan ECM, Shimizu S, Haraguchi T, Xiao M, Kurose T, Ohkubo A, Sekine M, Shibata T, Millington CL, Williams DM

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116305 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*CP*GP*CP*GP*AP*AP*TP*(B7C)P*CP*GP*CP*G)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.69 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand HT 1 x HT
1 modified residue:
Ligand B7C 2 x B7C

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-6A
Spacegroup: P212121
Unit cell:
a: 25.03Å b: 41.659Å c: 64.569Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.237 0.231 0.283
Expression system: Not provided

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