› 3gm8

X-ray diffraction
2.4Å resolution

Crystal structure of a beta-glycosidase from Bacteroides vulgatus

Released:
DOI: 10.2210/pdb3gm8/pdb
PDB entry 3gm8 coloured by chain, front view.
PDB entry 3gm8 coloured by chain, side view.
PDB entry 3gm8 coloured by chain, top view.
Source organism: Phocaeicola vulgatus ATCC 8482
Entry authors: Bonanno JB, Rutter M, Bain KT, Iizuka M, Ozyurt S, Wasserman S, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107852 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycoside hydrolase family 2, candidate beta-glycosidase Chain: A
Molecule details ›
Chain: A
Length: 801 amino acids
Theoretical weight: 91.08 KDa
Source organism: Phocaeicola vulgatus ATCC 8482
Expression system: Escherichia coli
UniProt:
  • Canonical: A6KXE5 (Residues: 19-815; Coverage: 100%)
Gene name: BVU_0391
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand GOL 2 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: C2221
Unit cell:
a: 62.754Å b: 193.348Å c: 190.667Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.229 0.226 0.287
Expression system: Escherichia coli

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