› 3gom

X-ray diffraction
2.3Å resolution

Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4

Released:
DOI: 10.2210/pdb3gom/pdb
PDB entry 3gom coloured by chain, front view.
PDB entry 3gom coloured by chain, side view.
PDB entry 3gom coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligand.
Hall JP, O'Sullivan K, Naseer A, Smith JA, Kelly JM, Cardin CJ
Proc Natl Acad Sci U S A 108 17610-4 (2011)
PMID: 21969542

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116317 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand BA 5 x BA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: OXFORD DIFFRACTION ENHANCE ULTRA
Spacegroup: C2
Unit cell:
a: 65.2Å b: 23.8Å c: 37.41Å
α: 90° β: 110.01° γ: 90°
R-values:
R R work R free
0.264 0.26 0.349
Expression system: Not provided

Quick links

Citations

6 review citations

The path for metal complexes to a DNA target.
Komor et al. (2013)
5 more

4 mentions without citation

Structural genomics and drug discovery for infectious diseases.
Anderson WF. (2009)
3 more