› 3gsd

X-ray diffraction
2.05Å resolution

2.05 Angstrom structure of a divalent-cation tolerance protein (CutA) from Yersinia pestis

Released:
DOI: 10.2210/pdb3gsd/pdb
PDB entry 3gsd coloured by chain, front view.
PDB entry 3gsd coloured by chain, side view.
PDB entry 3gsd coloured by chain, top view.
Source organism: Yersinia pestis CO92
Entry authors: Minasov G, Wawrzak Z, Skarina T, Onopriyenko O, Peterson SN, Savchenko A, Anderson WF, Center for Structural Genomics of Infectious Diseases (CSGID)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181093 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Divalent-cation tolerance protein CutA Chains: A, B, C, D, E, F, G, H, I, J, K, L
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L
Length: 122 amino acids
Theoretical weight: 13.55 KDa
Source organism: Yersinia pestis CO92
Expression system: Escherichia coli
UniProt:
  • Canonical: Q74XD3 (Residues: 1-119; Coverage: 100%)
Gene names: YPO0346, YP_0500, cutA, y0604
Sequence domains: CutA1 divalent ion tolerance protein
Structure domains: Alpha-Beta Plaits

Ligands and Environments

4 bound ligands:
Ligand NA 22 x NA
Ligand PEG 12 x PEG
Ligand EPE 13 x EPE
Ligand EDO 3 x EDO
1 modified residue:
Ligand MSE 24 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: C2221
Unit cell:
a: 140.782Å b: 157.914Å c: 157.132Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.159 0.156 0.2
Expression system: Escherichia coli

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