› 3gsj

X-ray diffraction
1.8Å resolution

A Bulky Rhodium Complex Bound to an Adenosine-Adenosine DNA Mismatch

Released:
DOI: 10.2210/pdb3gsj/pdb
PDB entry 3gsj coloured by chain, front view.
PDB entry 3gsj coloured by chain, side view.
PDB entry 3gsj coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
A bulky rhodium complex bound to an adenosine-adenosine DNA mismatch: general architecture of the metalloinsertion binding mode.
Zeglis BM, Pierre VC, Kaiser JT, Barton JK
Biochemistry 48 4247-53 (2009)
PMID: 19374348

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116331 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3' Chain: A
Molecule details ›
Chain: A
Length: 12 nucleotides
Theoretical weight: 3.67 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand NA 1 x NA
Ligand CL 1 x CL
Ligand R1C 2 x R1C
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RUH3R
Spacegroup: P43212
Unit cell:
a: 39.02Å b: 39.02Å c: 57.42Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.185 0.183 0.213
Expression system: Not provided

Quick links

Citations

4 review citations

Ruthenium(II) polypyridyl complexes and DNA--from structural probes to cellular imaging and therapeutics.
Gill et al. (2012)
3 more

5 mentions without citation

The many twists and turns of DNA: template, telomere, tool, and target.
Egli et al. (2010)
4 more