› 3gx4

X-ray diffraction
2.7Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116344 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
Alkyltransferase-like protein 1 Chain: X
Molecule details ›
Chain: X
Length: 116 amino acids
Theoretical weight: 13.66 KDa
Source organism: Schizosaccharomyces pombe
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9UTN9 (Residues: 1-108; Coverage: 100%)
Gene names: SPAC1250.04c, atl1
Sequence domains: 6-O-methylguanine DNA methyltransferase, DNA binding domain
Structure domains: Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3') Chain: Y
Molecule details ›
Chain: Y
Length: 13 nucleotides
Theoretical weight: 4.01 KDa
Source organism: Schizosaccharomyces pombe
Expression system: Not provided
DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3') Chain: Z
Molecule details ›
Chain: Z
Length: 13 nucleotides
Theoretical weight: 3.95 KDa
Source organism: Schizosaccharomyces pombe
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand NCO 2 x NCO
1 modified residue:
Ligand 6OG 1 x 6OG

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P6122
Unit cell:
a: 59.728Å b: 59.728Å c: 238.028Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.231 0.227 0.296
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

25 review citations

Nucleotide excision repair in eukaryotes.
Schärer OD. (2013)
24 more

8 mentions without citation

Alkyltransferase-like proteins: molecular switches between DNA repair pathways.
Tubbs et al. (2010)
7 more