› 3gyg

X-ray diffraction
2.45Å resolution

Crystal structure of yhjK (haloacid dehalogenase-like hydrolase protein) from Bacillus subtilis

Released:
DOI: 10.2210/pdb3gyg/pdb
PDB entry 3gyg coloured by chain, front view.
PDB entry 3gyg coloured by chain, side view.
PDB entry 3gyg coloured by chain, top view.
Source organism: Bacillus subtilis subsp. subtilis str. 168
Entry authors: Nocek B, Stein A, Wu R, Jedrzejczak R, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Reaction catalysed: 
Kanosamine 6-phosphate + H(2)O = kanosamine + phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
homo tetramer
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126596 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Kanosamine-6-phosphate phosphatase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 289 amino acids
Theoretical weight: 33.75 KDa
Source organism: Bacillus subtilis subsp. subtilis str. 168
Expression system: Escherichia coli
UniProt:
  • Canonical: O07565 (Residues: 1-281; Coverage: 100%)
Gene names: BSU10540, ntdB, yhjK
Sequence domains: Sucrose-6F-phosphate phosphohydrolase
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand MG 4 x MG
1 modified residue:
Ligand MSE 20 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 72.077Å b: 111.732Å c: 135.173Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.214 0.21 0.277
Expression system: Escherichia coli

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