› 3gza

X-ray diffraction
1.6Å resolution

Crystal structure of putative alpha-L-fucosidase (NP_812709.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.60 A resolution

Released:
DOI: 10.2210/pdb3gza/pdb
PDB entry 3gza coloured by chain, front view.
PDB entry 3gza coloured by chain, side view.
PDB entry 3gza coloured by chain, top view.
Source organism: Bacteroides thetaiotaomicron VPI-5482
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183602 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
F5/8 type C domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 443 amino acids
Theoretical weight: 50.79 KDa
Source organism: Bacteroides thetaiotaomicron VPI-5482
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8A169 (Residues: 19-460; Coverage: 100%)
Gene name: BT_3798
Sequence domains:
Structure domains:

Ligands and Environments

4 bound ligands:
Ligand EPE 1 x EPE
Ligand EDO 8 x EDO
Ligand NA 2 x NA
Ligand UNL 1 x UNL
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: C2
Unit cell:
a: 117.052Å b: 81.532Å c: 111.572Å
α: 90° β: 103.55° γ: 90°
R-values:
R R work R free
0.14 0.139 0.168
Expression system: Escherichia coli

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