3gzf

X-ray diffraction
2.76Å resolution

Structure of the C-terminal domain of nsp4 from Feline Coronavirus

Released:
Source organism: Feline coronavirus

Function and Biology Details

Reactions catalysed:
S-adenosyl-L-methionine + a 5'-(N(7)-methyl 5'-triphosphoguanosine)-(ribonucleotide)-[mRNA] = S-adenosyl-L-homocysteine + a 5'-(N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-ribonucleotide)-[mRNA]
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
GTP + a 5'-diphospho-[mRNA] = diphosphate + a 5'-(5'-triphosphoguanosine)-[mRNA]
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
ATP + H(2)O = ADP + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
homo dimer (preferred)
monomeric
PDBe Complex ID:
PDB-CPX-189164 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Non-structural protein 4 Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 96 amino acids
Theoretical weight: 10.76 KDa
Source organism: Feline coronavirus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q98VG9 (Residues: 2808-2902; Coverage: 1%)
Gene names: 1a-1b, rep
Sequence domains: Coronavirus replicase NSP4, C-terminal
Structure domains: Coronavirus nonstructural protein 4 C-terminus

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X12
Spacegroup: P43
Unit cell:
a: 127.538Å b: 127.538Å c: 42.797Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.243 0.24 0.3
Expression system: Escherichia coli BL21(DE3)