› 3gzs

X-ray diffraction
2.09Å resolution

Crystal structure of a susd superfamily protein (bf3413) from bacteroides fragilis nctc 9343 at 2.10 A resolution

Released:
DOI: 10.2210/pdb3gzs/pdb
PDB entry 3gzs coloured by chain, front view.
PDB entry 3gzs coloured by chain, side view.
PDB entry 3gzs coloured by chain, top view.
Source organism: Bacteroides fragilis NCTC 9343
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177449 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Uncharacterized SusD superfamily protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 515 amino acids
Theoretical weight: 58.47 KDa
Source organism: Bacteroides fragilis NCTC 9343
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5L9X2 (Residues: 29-542; Coverage: 95%)
Gene name: BF9343_3323
Sequence domains: Susd and RagB outer membrane lipoprotein
Structure domains: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat

Ligands and Environments

2 bound ligands:
Ligand GOL 6 x GOL
Ligand ACT 7 x ACT
2 modified residues:
Ligand MSE 28 x MSE
Ligand OCS 2 x OCS

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL12-2
Spacegroup: P21
Unit cell:
a: 88.921Å b: 50.377Å c: 117.95Å
α: 90° β: 108.05° γ: 90°
R-values:
R R work R free
0.158 0.156 0.198
Expression system: Escherichia coli

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