› 3gzt

Electron Microscopy
3.8Å resolution

VP7 recoated rotavirus DLP

Released:
DOI: 10.2210/pdb3gzt/pdb
PDB entry 3gzt coloured by chain, front view.
PDB entry 3gzt coloured by chain, side view.
PDB entry 3gzt coloured by chain, top view.
Source organism: Simian rotavirus A strain RRV
Primary publication:
Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM.
Chen JZ, Settembre EC, Aoki ST, Zhang X, Bellamy AR, Dormitzer PR, Harrison SC, Grigorieff N
Proc Natl Acad Sci U S A 106 10644-8 (2009)
PMID: 19487668
Related structures: EMD-1571

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 780-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-146172 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Outer capsid glycoprotein VP7 Chains: B, F, G, H, I, J, K, L, M, N, O, P, Q
Molecule details ›
Chains: B, F, G, H, I, J, K, L, M, N, O, P, Q
Length: 255 amino acids
Theoretical weight: 28.74 KDa
Source organism: Simian rotavirus A strain RRV
UniProt:
  • Canonical: P12476 (Residues: 58-312; Coverage: 92%)
Sequence domains: Glycoprotein VP7
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
1 bound ligand:
Ligand CA 30 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-1571

Quick links

Citations

21 review citations

Single-Particle Cryo-EM at Crystallographic Resolution.
Cheng Y. (2015)
20 more

4 mentions without citation

Rotavirus Particle Disassembly and Assembly In Vivo and In Vitro.
Asensio-Cob et al. (2023)
3 more