› 3h7c

X-ray diffraction
1.5Å resolution

Crystal Structure of Arabidopsis thaliana Agmatine Deiminase from Cell Free Expression

Released:
DOI: 10.2210/pdb3h7c/pdb
PDB entry 3h7c coloured by chain, front view.
PDB entry 3h7c coloured by chain, side view.
PDB entry 3h7c coloured by chain, top view.
Source organism: Arabidopsis thaliana
Entry authors: Burgie ES, Bingman CA, Phillips Jr GN, Center for Eukaryotic Structural Genomics (CESG)

Function and Biology Details

Reaction catalysed: 
Agmatine + H(2)O = N-carbamoylputrescine + NH(3)
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-184586 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Agmatine deiminase Chain: X
Molecule details ›
Chain: X
Length: 383 amino acids
Theoretical weight: 43.43 KDa
Source organism: Arabidopsis thaliana
Expression system: CELL-FREE SYNTHESIS
UniProt:
  • Canonical: Q8GWW7 (Residues: 2-383; Coverage: 100%)
Gene names: AIH, At5g08170, EMB1873, T22D6.110
Sequence domains: Porphyromonas-type peptidyl-arginine deiminase
Structure domains: L-arginine/glycine Amidinotransferase; Chain A

Ligands and Environments

6 bound ligands:
Ligand CL 2 x CL
Ligand MG 1 x MG
Ligand NA 2 x NA
Ligand K 1 x K
Ligand 211 1 x 211
Ligand 1PE 1 x 1PE
1 modified residue:
Ligand MSE 7 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-D
Spacegroup: C2
Unit cell:
a: 123.715Å b: 69.932Å c: 50.917Å
α: 90° β: 98.4° γ: 90°
R-values:
R R work R free
0.147 0.146 0.174
Expression system: CELL-FREE SYNTHESIS

Quick links