3hax

X-ray diffraction
2.11Å resolution

Crystal structure of a substrate-bound Gar1-minus H/ACA RNP from Pyrococcus furiosus

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-181670 (preferred)
Entry contents:
3 distinct polypeptide molecules
2 distinct RNA molecules
Macromolecules (5 distinct):
Probable tRNA pseudouridine synthase B Chain: A
Molecule details ›
Chain: A
Length: 346 amino acids
Theoretical weight: 39.45 KDa
Source organism: Pyrococcus furiosus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7LWY0 (Residues: 1-340; Coverage: 100%)
Gene names: PF1785, truB
Sequence domains:
Structure domains:
Ribosome biogenesis protein Nop10 Chain: C
Molecule details ›
Chain: C
Length: 60 amino acids
Theoretical weight: 7.21 KDa
Source organism: Pyrococcus furiosus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8U1R4 (Residues: 1-60; Coverage: 100%)
Gene names: PF1141, nop10
Sequence domains: Nucleolar RNA-binding protein, Nop10p family
Structure domains: H/ACA ribonucleoprotein complex, subunit Nop10
Large ribosomal subunit protein eL8 Chain: D
Molecule details ›
Chain: D
Length: 130 amino acids
Theoretical weight: 14.31 KDa
Source organism: Pyrococcus furiosus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8U160 (Residues: 2-123; Coverage: 99%)
Gene names: PF1367, rpl7ae
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Structure domains: 60s Ribosomal Protein L30; Chain: A;
H/ACA RNA Chain: E
Molecule details ›
Chain: E
Length: 63 nucleotides
Theoretical weight: 20.39 KDa
5'-R(*AP*UP*AP*AP*UP*UP*(FHU)P*GP*AP*CP*UP*CP*AP*A)-3' Chain: F
Molecule details ›
Chain: F
Length: 14 nucleotides
Theoretical weight: 4.45 KDa

Ligands and Environments

1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P21212
Unit cell:
a: 187.809Å b: 63.696Å c: 83.848Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.204 0.203 0.22
Expression system: Escherichia coli