› 3hdj

X-ray diffraction
1.7Å resolution

The crystal structure of probable ornithine cyclodeaminase from Bordetella pertussis Tohama I

Released:
DOI: 10.2210/pdb3hdj/pdb
PDB entry 3hdj coloured by chain, front view.
PDB entry 3hdj coloured by chain, side view.
PDB entry 3hdj coloured by chain, top view.
Source organism: Bordetella pertussis
Entry authors: Tan K, Sather A, Clancy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182073 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Probable ornithine cyclodeaminase Chains: A, B
Molecule details ›
Chains: A, B
Length: 313 amino acids
Theoretical weight: 32.8 KDa
Source organism: Bordetella pertussis
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7VSP8 (Residues: 1-310; Coverage: 100%)
Gene name: BP0354
Sequence domains: Ornithine cyclodeaminase/mu-crystallin family
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand CL 7 x CL
Ligand GOL 2 x GOL
Ligand IMD 3 x IMD
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P21
Unit cell:
a: 63.405Å b: 50.923Å c: 106.999Å
α: 90° β: 100.98° γ: 90°
R-values:
R R work R free
0.18 0.178 0.212
Expression system: Escherichia coli

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